The bioinformatics tools Kibak commonly uses...

Page Rank
as of Dec07
Link & Resource Description

  Page Rank
as of Mar07
Link & Resource Description

NCBI National Center for Biotechnology Information - I sometimes access this site several times per day...  
Genomes - The UCSC Genome Browser - now provides access to more than 30 genomes (mostly metazoan).
PDB - Protein Data Bank - The principal database of 3D protein structures.  
AMAP - Multiple Alignment by Sequence Annealing - AMAP is a new approach to multiple sequence alignment that can be accessed from within STRAP.
MESHI - Meshi is silk! - MESHI is an opensource collection of Java classes for protein modeling from the Laboratory of Chen Keasar at Ben Gurion University.  
STRAP 0 - STRuctural Alignment Program for proteins - STRAP is an interactive editor for multiple sequence Alignments. STRAP can also be found here.
MyList of useful sites and My University Website  
CLC Free Work Bench - Free Basic Bioinformatics Package - Linux/2000/XP/Mac versions of the CLC Free Workbench for basic bioinformatics analyses.
BioEDIT - Biological Sequence Editor - BioEdit is a sequence alignment editor for 95/98/NT/2000/XP.  
CMS Resource - Protein Structure Prediction and Modelling - A compendium of tools and resources hosted at the San Diego Supercomputer Consortium.
ClustalW ClustalW Nice implementation of this popular multiple alignment program. Outputs postscript trees based on the alignment.  
ProbCons - Probabilistic Consistency-based Multiple Alignment of Amino Acid Sequences - By Chuong Do and Michael Brudno in the Batzoglou Lab.
PFP - Patch Finder Plus - Predicts positively charged patches on proteins. From the lab group of Yael Mandel-Gutfreund at the Technion in Haifa.  
VOROLIGN - Structural Alignment using Voronoi contacts -
Primer3 Optimizing Primer Design - Allows you to set a variety of parameters and choose from a set of possible primers. Originally from MIT, now hosted at SourceFourge with many spinoff sites.  
PrimaClade - Primer design by multiple alignments -